PHYPA_006028 protein (Physcomitrella patens)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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protein homology

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Score

PHYPA_006028

Flavodoxin-like domain-containing protein. (137 aa)

Predicted Functional Partners:

PHYPA_022878

0.764

PHYPA_008698

0.536

PHYPA_001221

0.535

PHYPA_018242

0.535

PHYPA_011644

0.534

PHYPA_015943

0.514

PHYPA_023079

0.467

PHYPA_026175

0.430

PHYPA_023786

0.430

PHYPA_023097

0.430

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_001221	PHYPA_006028	A0A2K1L9U2	A0A2K1KMY3	Uncharacterized protein.	Flavodoxin-like domain-containing protein.	0.535
PHYPA_001221	PHYPA_008698	A0A2K1L9U2	A0A2K1KEW4	Uncharacterized protein.	FMN_red domain-containing protein.	0.535
PHYPA_001221	PHYPA_011644	A0A2K1L9U2	A0A2K1K7K2	Uncharacterized protein.	FMN_red domain-containing protein.	0.535
PHYPA_001221	PHYPA_022878	A0A2K1L9U2	A0A2K1J0D8	Uncharacterized protein.	Nitroreductase domain-containing protein.	0.808
PHYPA_006028	PHYPA_001221	A0A2K1KMY3	A0A2K1L9U2	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.535
PHYPA_006028	PHYPA_008698	A0A2K1KMY3	A0A2K1KEW4	Flavodoxin-like domain-containing protein.	FMN_red domain-containing protein.	0.536
PHYPA_006028	PHYPA_011644	A0A2K1KMY3	A0A2K1K7K2	Flavodoxin-like domain-containing protein.	FMN_red domain-containing protein.	0.534
PHYPA_006028	PHYPA_015943	A0A2K1KMY3	A0A2K1JPU2	Flavodoxin-like domain-containing protein.	Flavokinase domain-containing protein.	0.514
PHYPA_006028	PHYPA_018242	A0A2K1KMY3	A9SHE4	Flavodoxin-like domain-containing protein.	Predicted protein.	0.535
PHYPA_006028	PHYPA_022878	A0A2K1KMY3	A0A2K1J0D8	Flavodoxin-like domain-containing protein.	Nitroreductase domain-containing protein.	0.764
PHYPA_006028	PHYPA_023079	A0A2K1KMY3	A0A2K1J0X5	Flavodoxin-like domain-containing protein.	Uncharacterized protein.	0.467
PHYPA_006028	PHYPA_023097	A0A2K1KMY3	A0A2K1J0Z2	Flavodoxin-like domain-containing protein.	Catalase domain-containing protein.	0.430
PHYPA_006028	PHYPA_023786	A0A2K1KMY3	A0A2K1IXG2	Flavodoxin-like domain-containing protein.	Catalase domain-containing protein.	0.430
PHYPA_006028	PHYPA_026175	A0A2K1KMY3	A0A2K1IRZ2	Flavodoxin-like domain-containing protein.	Catalase domain-containing protein.	0.430
PHYPA_008698	PHYPA_001221	A0A2K1KEW4	A0A2K1L9U2	FMN_red domain-containing protein.	Uncharacterized protein.	0.535
PHYPA_008698	PHYPA_006028	A0A2K1KEW4	A0A2K1KMY3	FMN_red domain-containing protein.	Flavodoxin-like domain-containing protein.	0.536
PHYPA_008698	PHYPA_015943	A0A2K1KEW4	A0A2K1JPU2	FMN_red domain-containing protein.	Flavokinase domain-containing protein.	0.514
PHYPA_008698	PHYPA_018242	A0A2K1KEW4	A9SHE4	FMN_red domain-containing protein.	Predicted protein.	0.535
PHYPA_008698	PHYPA_022878	A0A2K1KEW4	A0A2K1J0D8	FMN_red domain-containing protein.	Nitroreductase domain-containing protein.	0.764
PHYPA_008698	PHYPA_023079	A0A2K1KEW4	A0A2K1J0X5	FMN_red domain-containing protein.	Uncharacterized protein.	0.467

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

46

average node degree:

8.36

avg. local clustering coefficient:

0.806

expected number of edges:

28

PPI enrichment p-value:

0.00127

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 104

1.54

3.31

2.45e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 53

1.79

4.48

8.78e-15

GO:0019843

rRNA binding

7 of 42

1.73

3.12

3.68e-09

GO:0070180

Large ribosomal subunit rRNA binding

2 of 2

2.51

1.2

0.0063

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 61

1.77

4.86

1.07e-17

GO:0044391

Ribosomal subunit

2 of 13

1.7

0.92

0.0141

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:33351813

(2020) Complete genome reveals genetic repertoire and potential metabolic strategies involved in lignin degradation by environmental ligninolytic Klebsiella variicola P1CD1.

6 of 29

1.83

3.22

9.46e-09

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:188

Ribosome

11 of 17

2.32

8.92

5.53e-22

CL:191

Ribosome

8 of 12

2.34

6.71

2.06e-15

CL:193

Small ribosomal subunit, and Ribosome

3 of 5

2.29

2.23

5.14e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

gfo03010

Ribosome

11 of 53

1.83

5.3

2.53e-18

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

6 of 37

1.72

2.61

2.61e-07

GOCC:0043232

Intracellular non-membrane-bounded organelle

7 of 125

1.26

1.58

1.62e-06

GOCC:0043229

Intracellular organelle

10 of 380

0.93

1.04

2.92e-07

GOCC:0005622

Intracellular

11 of 1204

0.47

0.4

0.00031

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

11 of 56

1.81

5.09

8.08e-18

KW-0699

rRNA-binding

7 of 38

1.78

3.42

6.31e-10

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