STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_004487RanBD1 domain-containing protein. (214 aa)    
Predicted Functional Partners:
PHYPA_009207
Nuclear pore protein.
   
 0.960
PHYPA_011605
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.929
PHYPA_015115
WPP domain-containing protein.
   
 0.912
PHYPA_010157
WPP domain-containing protein.
   
 0.912
PHYPA_009425
Uncharacterized protein.
    
 0.894
PHYPA_015625
DUF5311 domain-containing protein.
   
 0.892
PHYPA_008285
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
   
 0.890
PHYPA_011120
Uncharacterized protein.
   
 0.885
PHYPA_005459
Uncharacterized protein.
   
 0.885
PHYPA_020433
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.864
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.