STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_003548Uncharacterized protein. (1657 aa)    
Predicted Functional Partners:
PHYPA_009016
Uncharacterized protein; Belongs to the actin family.
    
 0.981
PHYPA_004436
Uncharacterized protein; Belongs to the actin family.
    
 0.976
PHYPA_025415
RuvB-like helicase.
    
 0.972
RUVBL1501
RuvB-like helicase; Belongs to the RuvB family.
    
 0.972
PHYPA_018325
YL1_C domain-containing protein.
    
 0.961
PHYPA_007768
RuvB-like helicase.
   
 0.938
RUVBL1503
RuvB-like helicase; Belongs to the RuvB family.
   
 0.938
PHYPA_020181
Uncharacterized protein; Belongs to the actin family.
    
 0.935
PHYPA_013111
Uncharacterized protein; Belongs to the actin family.
    
 0.935
PHYPA_010764
Uncharacterized protein.
    
 0.837
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.