STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_003756Uncharacterized protein. (442 aa)    
Predicted Functional Partners:
PHYPA_029392
Predicted protein.
   
    0.943
PHYPA_019935
Uncharacterized protein.
   
    0.905
PHYPA_012537
Predicted protein.
   
    0.892
PHYPA_003287
Uncharacterized protein.
   
    0.882
PHYPA_030748
Uncharacterized protein.
   
   0.866
PHYPA_017716
Sas10 domain-containing protein.
   
    0.844
PHYPA_009791
Predicted protein.
   
    0.839
PHYPA_013504
Uncharacterized protein.
   
 
  0.835
PHYPA_007369
Uncharacterized protein.
   
    0.823
PHYPA_026846
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.822
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.