STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_000125PAP_fibrillin domain-containing protein. (561 aa)    
Predicted Functional Partners:
PHYPA_029960
N-acetyltransferase domain-containing protein.
   
 0.663
PHYPA_008039
Uncharacterized protein.
   
 
  0.653
PHYPA_017537
Predicted protein.
   
 
 0.569
PHYPA_013679
Uncharacterized protein.
    
 
 0.564
PHYPA_015672
Uncharacterized protein.
      
 0.562
PHYPA_015307
Uncharacterized protein.
      
 0.519
PHYPA_025985
Uncharacterized protein.
   
 0.507
PHYPA_023733
Uncharacterized protein.
   
 0.507
PHYPA_023298
KNOX1 domain-containing protein.
   
 0.507
PHYPA_023296
Uncharacterized protein.
   
 0.507
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.