PHYPA_010515 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYPA_010515

Predicted protein. (111 aa)

Predicted Functional Partners:

PHYPA_008333

0.988

PHYPA_012890

0.988

PHYPA_004952

0.987

PHYPA_000382

0.986

PHYPA_014555

0.986

PHYPA_016074

0.982

PHYPA_006126

0.982

PHYPA_001271

0.973

PHYPA_031132

0.973

PHYPA_018165

0.972

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000382	PHYPA_001271	A9RZU5	A9RQ30	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.990
PHYPA_000382	PHYPA_004952	A9RZU5	A0A2K1KW14	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ubiquitin-like domain-containing protein.	0.995
PHYPA_000382	PHYPA_006126	A9RZU5	A9RZ45	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Predicted protein.	0.995
PHYPA_000382	PHYPA_008333	A9RZU5	A0A2K1KDY3	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein.	0.995
PHYPA_000382	PHYPA_010515	A9RZU5	A9RCB8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Predicted protein.	0.986
PHYPA_000382	PHYPA_012890	A9RZU5	A9SKS4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Predicted protein.	0.995
PHYPA_000382	PHYPA_014555	A9RZU5	A9S0Q1	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.900
PHYPA_000382	PHYPA_016074	A9RZU5	A0A2K1JQ74	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L2_C domain-containing protein.	0.995
PHYPA_000382	PHYPA_018165	A9RZU5	A0A2K1JGS4	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.994
PHYPA_000382	PHYPA_031132	A9RZU5	A9S6F7	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.990
PHYPA_001271	PHYPA_000382	A9RQ30	A9RZU5	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.990
PHYPA_001271	PHYPA_004952	A9RQ30	A0A2K1KW14	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Ubiquitin-like domain-containing protein.	0.998
PHYPA_001271	PHYPA_006126	A9RQ30	A9RZ45	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Predicted protein.	0.991
PHYPA_001271	PHYPA_008333	A9RQ30	A0A2K1KDY3	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.990
PHYPA_001271	PHYPA_010515	A9RQ30	A9RCB8	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Predicted protein.	0.973
PHYPA_001271	PHYPA_012890	A9RQ30	A9SKS4	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Predicted protein.	0.990
PHYPA_001271	PHYPA_014555	A9RQ30	A9S0Q1	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.990
PHYPA_001271	PHYPA_016074	A9RQ30	A0A2K1JQ74	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_L2_C domain-containing protein.	0.991
PHYPA_001271	PHYPA_018165	A9RQ30	A0A2K1JGS4	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.983
PHYPA_001271	PHYPA_031132	A9RQ30	A9S6F7	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	Predicted protein; Belongs to the universal ribosomal protein uS17 family.	0.900

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About