STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_021379Predicted protein; Belongs to the AAA ATPase family. (446 aa)    
Predicted Functional Partners:
PHYPA_021049
Predicted protein.
   
 0.998
Mcb1
Multiubiquitin chain-binding protein.
   
 0.998
PHYPA_025555
RPN13_C domain-containing protein.
   
 0.997
PHYPA_013316
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_008007
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_000976
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_028258
Predicted protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_024544
Predicted protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_029561
Predicted protein; Belongs to the AAA ATPase family.
  
0.997
PHYPA_023249
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.996
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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