STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_027802Predicted protein. (268 aa)    
Predicted Functional Partners:
PHYPA_028246
Uncharacterized protein.
    
 0.948
PHYPA_027103
POP4 domain-containing protein.
    
 0.926
PHYPA_002319
Uncharacterized protein.
    
 0.876
PHYPA_025456
Ribosomal_L7Ae domain-containing protein.
   
 0.692
PHYPA_001724
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.692
PHYPA_018850
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.692
PHYPA_025599
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
     
 0.654
PHYPA_018501
Uncharacterized protein.
   
 
  0.623
PHYPA_013025
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 
  0.623
PHYPA_020078
Predicted protein; Belongs to the universal ribosomal protein uS11 family.
   
 
  0.623
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.