STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020491Predicted protein; Belongs to the SecY/SEC61-alpha family. (543 aa)    
Predicted Functional Partners:
PHYPA_004762
Predicted protein.
   
 0.990
PHYPA_011600
Predicted protein; Belongs to the SecY/SEC61-alpha family.
  
 0.990
PHYPA_029170
Predicted protein; Belongs to the SecY/SEC61-alpha family.
  
 0.990
PHYPA_004952
Ubiquitin-like domain-containing protein.
   
 0.986
PHYPA_029387
Predicted protein.
  
 
 0.973
PHYPA_022948
MRP-S28 domain-containing protein.
   
 0.966
PHYPA_001271
Predicted protein; Belongs to the universal ribosomal protein uS17 family.
  
 0.966
PHYPA_031132
Predicted protein; Belongs to the universal ribosomal protein uS17 family.
  
 0.966
PHYPA_022909
Uncharacterized protein.
  
 0.965
PHYPA_003138
Predicted protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.965
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.