STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_001611Uncharacterized protein. (333 aa)    
Predicted Functional Partners:
PHYPA_009430
Predicted protein.
    
 0.463
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
   
 
 0.444
rpl2-2
Ribosomal protein L2.
   
 
 0.444
PHYPA_008333
Uncharacterized protein.
   
   0.441
PHYPA_012890
Predicted protein.
   
   0.441
PHYPA_016074
Ribosomal_L2_C domain-containing protein.
   
 
 0.436
PHYPA_006126
Predicted protein.
   
 
 0.436
PHYPA_004043
Uncharacterized protein.
   
   0.428
PHYPA_016028
Predicted protein.
   
   0.428
PHYPA_016877
Predicted protein.
   
   0.428
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.