STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_000836Predicted protein; Belongs to the protein kinase superfamily. (408 aa)    
Predicted Functional Partners:
PHYPA_020448
PPR_long domain-containing protein.
   
 0.991
PHYPA_007143
Uncharacterized protein.
   
 0.991
PHYPA_030649
BSD domain-containing protein.
   
 0.987
PHYPA_028725
General transcription factor IIH subunit.
   
 0.987
PHYPA_002166
Uncharacterized protein.
    
 0.987
PHYPA_008914
Predicted protein.
    
 0.987
PHYPA_004039
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.986
PHYPA_030840
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.984
PHYPA_007499
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.984
PHYPA_010525
MAT1 domain-containing protein.
   
 0.978
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.