STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_001078Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)    
Predicted Functional Partners:
PHYPA_027176
Uncharacterized protein; Belongs to the GST superfamily.
   
 0.991
EF1Bgamma2
EF1Bgamma class glutathione S-transferase.
   
 0.991
EF1Bgamma1
EF1Bgamma class glutathione S-transferase.
   
 0.991
PHYPA_000382
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.904
PHYPA_014555
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.904
PHYPA_028954
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
 
    
 0.901
PHYPA_028369
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
 
    
 0.901
PHYPA_013321
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
 
    
 0.901
PHYPA_002945
Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.
 
    
 0.901
PHYPA_016302
Uncharacterized protein.
   
 0.883
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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