STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_012830Predicted protein. (141 aa)    
Predicted Functional Partners:
PHYPA_018859
DHFR domain-containing protein.
  
 
 0.818
PHYPA_017622
Thymidylate_kin domain-containing protein.
    
 0.564
PHYPA_021682
SnoaL-like domain-containing protein.
    
 0.525
PHYPA_001936
Uncharacterized protein.
    
 0.525
PHYPA_014199
Uncharacterized protein; Belongs to the thymidine kinase family.
    
 0.522
PHYPA_025392
Thymidine kinase.
    
 0.522
PHYPA_003062
GTP_cyclohydro2 domain-containing protein.
    
 0.510
PHYPA_000684
GTP_cyclohydro2 domain-containing protein.
    
 0.510
PHYPA_000569
Predicted protein.
    
 0.510
PHYPA_012258
BPL/LPL catalytic domain-containing protein.
  
    0.458
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.