STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020445Predicted protein; Belongs to the carbohydrate kinase PfkB family. (406 aa)    
Predicted Functional Partners:
PHYPA_008571
Xylose isomerase.
    
 0.929
PHYPA_020508
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
 0.922
PHYPA_008945
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
 0.922
PHYPA_004112
PKS_ER domain-containing protein.
  
 
 0.922
PHYPA_018383
Predicted protein.
  
 
 0.922
PHYPA_000467
Uncharacterized protein.
    
 0.914
PHYPA_003564
Predicted protein.
    
 0.914
PHYPA_030891
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.812
PHYPA_029468
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.812
PHYPA_007204
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.812
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.