STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_026106Predicted protein. (363 aa)    
Predicted Functional Partners:
PHYPA_020167
O-acyltransferase.
    
 0.980
PHYPA_013128
O-acyltransferase.
    
 0.980
PHYPA_018760
Predicted protein.
  
  
 
0.915
PHYPA_027376
Predicted protein.
  
  
 
0.914
PHYPA_019297
Uncharacterized protein.
   
 
 0.908
PHYPA_012457
Uncharacterized protein.
   
 
 0.908
PHYPA_018622
Uncharacterized protein.
   
 
 0.905
PHYPA_023990
Uncharacterized protein.
  
  
 
0.901
PHYPA_024203
Uncharacterized protein.
     
  0.900
PHYPA_023326
Predicted protein.
     
  0.900
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.