STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabcf3ATP-binding cassette transporter, subfamily F, member 3 protein PpABCF3. (597 aa)    
Predicted Functional Partners:
PHYPA_029387
Predicted protein.
   
 
 0.764
PHYPA_004762
Predicted protein.
  
   0.733
PHYPA_024570
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.689
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.689
PHYPA_004053
Uncharacterized protein.
  
   0.667
rpl21
50S ribosomal protein L21, chloroplastic; This protein binds to 23S rRNA.
  
   0.667
PHYPA_016161
S1 motif domain-containing protein.
   
 0.657
PHYPA_005254
S1 motif domain-containing protein.
   
 0.657
PHYPA_011664
Predicted protein; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.636
rps7
Ribosomal protein S7.
  
 
 0.636
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.