STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_005778Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO small chain family. (182 aa)    
Predicted Functional Partners:
rbcL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
  
 0.939
PHYPA_023215
Uncharacterized protein.
     
  0.900
PHYPA_026161
Phosphoribulokinase.
   
 0.695
PHYPA_024101
Phosphoribulokinase.
   
 0.695
PHYPA_022831
Phosphoribulokinase.
   
 0.695
PHYPA_017629
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
  0.658
PHYPA_016693
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
  0.658
PHYPA_013921
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
  0.658
PHYPA_015934
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
  0.658
PHYPA_001113
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
  0.658
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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