STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_006485Predicted protein. (203 aa)    
Predicted Functional Partners:
PHYPA_009192
Predicted protein.
   
 0.969
PHYPA_001640
Uncharacterized protein.
   
 0.955
PHYPA_019560
Predicted protein.
    
 0.954
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.940
PHYPA_028932
Uncharacterized protein.
   
 0.939
PHYPA_011711
Uncharacterized protein.
   
 0.939
PHYPA_019090
IBB domain-containing protein.
   
 0.936
PHYPA_008182
Nop domain-containing protein.
   
 0.936
PHYPA_026851
Predicted protein.
    
 0.931
PHYPA_013826
Predicted protein.
    
 0.931
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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