STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_006072Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (224 aa)    
Predicted Functional Partners:
PHYPA_029631
Predicted protein.
  
 0.995
PHYPA_017615
DNA ligase.
   
 0.992
PHYPA_018859
DHFR domain-containing protein.
  
 
 0.990
PHYPA_021330
Predicted protein.
  
 0.990
PHYPA_016978
AAA domain-containing protein.
  
 0.983
PHYPA_005072
Uncharacterized protein.
   
 0.982
PHYPA_018083
DNA ligase.
   
 0.980
PHYPA_012100
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
  
 
 0.980
PHYPA_005508
Predicted protein.
  
 0.980
PHYPA_030325
Uncharacterized protein.
  
 0.978
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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