STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RabH21Rab6/RabH-family small GTPase. (213 aa)    
Predicted Functional Partners:
PHYPA_021690
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.886
PHYPA_018839
RIC1 domain-containing protein.
    
 0.850
PHYPA_002231
RIC1 domain-containing protein.
    
 0.850
PHYPA_006811
Uncharacterized protein.
    
 0.835
PHYPA_003098
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.822
PHYPA_024228
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.810
PHYPA_026304
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.810
PHYPA_027242
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.810
PHYPA_026268
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.810
SYP4A2
Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type; Belongs to the syntaxin family.
    
 0.761
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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