STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabcc15ATP-binding cassette transporter, subfamily C, member 15, group MRP protein PpABCC15. (1297 aa)    
Predicted Functional Partners:
PHYPA_026688
Uncharacterized protein.
   
 0.564
PHYPA_020453
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.523
PHYPA_030475
Uncharacterized protein.
    
 0.477
PHYPA_029277
IRK_C domain-containing protein.
    
 0.477
PHYPA_024433
IRK_C domain-containing protein.
    
 0.477
PHYPA_020684
Uncharacterized protein.
    
 0.477
PHYPA_019264
Uncharacterized protein.
    
 0.477
PHYPA_012278
Uncharacterized protein.
    
 0.477
PHYPA_007797
Uncharacterized protein.
    
 0.477
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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