STRINGSTRING
PP1S143_148V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S143_148V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S143_148V6.1Predicted protein (537 aa)    
Predicted Functional Partners:
PP1S42_208V6.1
Predicted protein (297 aa)
 
          0.547
PP1S123_97V6.1
Predicted protein (300 aa)
 
          0.543
PP1S13_21V6.1
Predicted protein (164 aa)
   
          0.499
PP1S157_76V6.1
Predicted protein (164 aa)
   
          0.497
PP1S89_131V6.1
Predicted protein (429 aa)
   
 
      0.492
PP1S149_6V6.1
Predicted protein (419 aa)
   
 
      0.485
PP1S162_11V6.1
Predicted protein (268 aa)
   
          0.482
PP1S125_47V6.1
Predicted protein (451 aa)
   
          0.463
PP1S204_5V6.1
Predicted protein (155 aa)
   
          0.456
PP1S172_23V6.1
Predicted protein (305 aa)
   
          0.448
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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