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PpDCL1a protein (Physcomitrella patens) - STRING interaction network
"PpDCL1a" - DsRNA-specific nuclease dicer and related ribonuclease in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PpDCL1aDsRNA-specific nuclease dicer and related ribonuclease (1866 aa)    
Predicted Functional Partners:
PpAGO1b
Argonaute family member (1173 aa)
     
  0.994
PpAGO1a
Argonaute family member (1197 aa)
     
  0.994
PpAGO1c
Argonaute family member (1147 aa)
     
  0.994
PP1S89_259V6.1
Annotation not available (742 aa)
     
  0.987
AGO1505
Argonaute family member (948 aa)
     
  0.987
SDG1508
Piwi domain-containing protein (249 aa)
     
  0.987
AGO1506
Argonaute family member (961 aa)
     
  0.987
AGO1507
Argonaute family member (1032 aa)
     
  0.987
AGO1504
Argonaute family member (923 aa)
     
  0.987
PP1S50_208V6.1
Annotation not available (765 aa)
     
 
  0.964
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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