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STRINGSTRING
PpDCL1a protein (Physcomitrella patens) - STRING interaction network
"PpDCL1a" - DsRNA-specific nuclease dicer and related ribonuclease in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PpDCL1aDsRNA-specific nuclease dicer and related ribonuclease ; Belongs to the helicase family. Dicer subfamily (1866 aa)    
Predicted Functional Partners:
PP1S20_272V6.1
Predicted protein (198 aa)
     
 
  0.956
DRB1501
Double-stranded RNA binding protein (441 aa)
       
 
  0.956
HEN1501
HEN1 protein (1021 aa)
       
 
  0.908
PP1S50_208V6.1
annotation not available (765 aa)
     
 
  0.884
PP1S389_45V6.1
annotation not available (810 aa)
     
 
  0.884
PP1S106_40V6.1
annotation not available (654 aa)
     
 
  0.884
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.859
PP1S31_215V6.1
Predicted protein (502 aa)
     
 
  0.853
RDR1502
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1152 aa)
     
 
  0.852
PP1S9_477V6.1
annotation not available (1376 aa)
   
 
0.852
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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