STRINGSTRING
PP1S55_45V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S55_45V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S55_45V6.1Predicted protein (704 aa)    
Predicted Functional Partners:
PP1S407_3V6.1
Predicted protein (303 aa)
     
 
  0.949
PP1S39_261V6.1
Predicted protein (303 aa)
     
 
  0.949
HDA1504
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (723 aa)
     
 
  0.931
HDA1505
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (774 aa)
     
 
  0.931
HDA1506
Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (431 aa)
     
 
  0.931
PP1S61_39V6.1
Predicted protein (2124 aa)
     
 
  0.913
PP1S480_18V6.1
annotation not available (207 aa)
     
 
  0.880
SNT1502
Putative histone deacetylase complex, SIN3 component (1510 aa)
     
 
  0.880
SNT1501
annotation not available (1387 aa)
     
 
  0.880
PP1S30_114V6.1
Uncharacterized protein (313 aa)
     
 
  0.880
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (7%) [HD]