STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps1830S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (79 aa)    
Predicted Functional Partners:
PHYPA_011630
Predicted protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.994
rps14-2
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.994
PHYPA_022948
MRP-S28 domain-containing protein.
   
 0.993
rps14
Ribosomal protein S14.
   
 0.993
PHYPA_015386
Uncharacterized protein.
   
 0.992
rps11-2
30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family.
   
 0.991
PHYPA_000609
Uncharacterized protein.
   
 
 0.988
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.988
rps7
Ribosomal protein S7.
   
 0.986
PHYPA_015695
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 0.985
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.