STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nii1Ferredoxin-nitrite reductase. (602 aa)    
Predicted Functional Partners:
PHYPA_013659
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
 
 
 
 0.987
PHYPA_018253
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
 
 
 
 0.987
Nia1;1
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
 
 
 
 0.987
PHYPA_022971
Glutamine synthetase.
     
 0.983
PHYPA_022972
Glutamine synthetase.
     
 0.983
PHYPA_025910
Glutamine synthetase.
     
 0.983
PHYPA_025908
Glutamine synthetase.
     
 0.983
PHYPA_025449
Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.
     
 0.979
PHYPA_025470
Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.
     
 0.979
NRT2;6
Nitrate transporter.
    
 0.971
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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