STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSEI_0022ABC-type antimicrobial peptide transport system, ATPase component. (233 aa)    
Predicted Functional Partners:
LSEI_0021
ABC-type antimicrobial peptide transport system, permease component.
 
 0.990
LSEI_0953
Lipoprotein release ABC-type transport system, permease component.
  
 0.968
LSEI_2895
ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.948
LSEI_1883
Hypothetical protein.
  
 0.723
LSEI_2893
Uncharacterized conserved membrane protein.
  
 
 0.719
LSEI_1993
ABC-type antimicrobial peptide transport system, permease component.
  
 0.713
LSEI_1814
ABC-type antimicrobial peptide transport system, ATPase component.
  
0.709
LSEI_0395
ABC-type antimicrobial peptide transport system, permease component.
   
 0.708
LSEI_2465
ABC-type antimicrobial peptide transport system, permease component.
   
 0.708
LSEI_2625
ABC-type antimicrobial peptide transport system, permease component.
   
 0.708
Your Current Organism:
Lactobacillus paracasei
NCBI taxonomy Id: 321967
Other names: L. paracasei ATCC 334, Lactobacillus casei ATCC 334, Lactobacillus casei str. ATCC 334, Lactobacillus casei strain ATCC 334, Lactobacillus paracasei ATCC 334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.