STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSEI_0553Hypothetical protein. (293 aa)    
Predicted Functional Partners:
LSEI_0554
Hypothetical protein.
       0.727
LSEI_0337
Transcriptional regulator.
  
     0.683
LSEI_0535
Hypothetical protein.
  
     0.673
LSEI_0546
Hypothetical protein.
 
     0.643
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.617
LSEI_0534
Type IV secretory pathway, VirD4 component.
  
   
 0.614
LSEI_0538
Type IV secretory pathway, VirB4 component.
  
   
 0.612
LSEI_2512
Predicted outer membrane protein.
  
     0.603
LSEI_2660
Subtilisin-like serine protease.
  
     0.603
LSEI_0067
Predicted metal-dependent membrane protease.
  
     0.595
Your Current Organism:
Lactobacillus paracasei
NCBI taxonomy Id: 321967
Other names: L. paracasei ATCC 334, Lactobacillus casei ATCC 334, Lactobacillus casei str. ATCC 334, Lactobacillus casei strain ATCC 334, Lactobacillus paracasei ATCC 334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.