STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSEI_1004Sodium/proton antiporter, CPA1 family; TC 2.A.36. (702 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.741
LSEI_1987
Transporter, CPA2 family; TC 2.A.37.
   
 
 0.511
LSEI_0973
Chloride channel protein EriC.
  
  
 0.488
LSEI_1002
Exonuclease III.
       0.432
potA
ABC-type spermidine/putrescine transport system, ATPase component; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.426
LSEI_1001
DNA polymerase III, epsilon subunit related 3'-5' exonuclease.
       0.408
LSEI_1005
Double-stranded beta-helix related protein.
       0.404
Your Current Organism:
Lactobacillus paracasei
NCBI taxonomy Id: 321967
Other names: L. paracasei ATCC 334, Lactobacillus casei ATCC 334, Lactobacillus casei str. ATCC 334, Lactobacillus casei strain ATCC 334, Lactobacillus paracasei ATCC 334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.