Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LSEI_0997 | LSEI_2182 | LSEI_0997 | LSEI_2182 | Predicted ATPase or kinase. | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.504 |
| LSEI_0997 | alr | LSEI_0997 | LSEI_2560 | Predicted ATPase or kinase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.768 |
| LSEI_2182 | LSEI_0997 | LSEI_2182 | LSEI_0997 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Predicted ATPase or kinase. | 0.504 |
| LSEI_2182 | LSEI_2183 | LSEI_2182 | LSEI_2183 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.800 |
| LSEI_2182 | LSEI_2184 | LSEI_2182 | LSEI_2184 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Predicted membrane protein. | 0.519 |
| LSEI_2182 | LSEI_2185 | LSEI_2182 | LSEI_2185 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Hypothetical protein. | 0.559 |
| LSEI_2182 | LSEI_2556 | LSEI_2182 | LSEI_2556 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Glutamate synthase (NADH) large subunit. | 0.646 |
| LSEI_2182 | LSEI_2747 | LSEI_2182 | LSEI_2747 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Aminotransferase. | 0.876 |
| LSEI_2182 | alr | LSEI_2182 | LSEI_2560 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.980 |
| LSEI_2182 | lysA | LSEI_2182 | LSEI_0098 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.489 |
| LSEI_2182 | nadE | LSEI_2182 | LSEI_1804 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source. | 0.515 |
| LSEI_2182 | nadK | LSEI_2182 | LSEI_0902 | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.486 |
| LSEI_2183 | LSEI_2182 | LSEI_2183 | LSEI_2182 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.800 |
| LSEI_2183 | LSEI_2184 | LSEI_2183 | LSEI_2184 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Predicted membrane protein. | 0.679 |
| LSEI_2183 | LSEI_2185 | LSEI_2183 | LSEI_2185 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Hypothetical protein. | 0.698 |
| LSEI_2183 | LSEI_2556 | LSEI_2183 | LSEI_2556 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Glutamate synthase (NADH) large subunit. | 0.866 |
| LSEI_2183 | LSEI_2747 | LSEI_2183 | LSEI_2747 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Aminotransferase. | 0.425 |
| LSEI_2184 | LSEI_2182 | LSEI_2184 | LSEI_2182 | Predicted membrane protein. | L-alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.519 |
| LSEI_2184 | LSEI_2183 | LSEI_2184 | LSEI_2183 | Predicted membrane protein. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.679 |
| LSEI_2184 | LSEI_2185 | LSEI_2184 | LSEI_2185 | Predicted membrane protein. | Hypothetical protein. | 0.948 |
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