STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSEI_2231Hypothetical protein. (164 aa)    
Predicted Functional Partners:
LSEI_2230
Permease of the major facilitator superfamily.
  
    0.787
LSEI_2232
Hypothetical protein.
       0.773
LSEI_2854
Uncharacterized conserved membrane protein.
  
     0.581
LSEI_2852
Uncharacterized membrane protein.
  
     0.561
LSEI_2437
Possible cell surface protein.
  
     0.540
LSEI_1080
Hypothetical protein.
  
     0.522
LSEI_0427
DNA polymerase III, alpha subunit (gram-positive type).
  
     0.515
LSEI_2337
Predicted membrane protein.
  
     0.465
LSEI_0599
Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.450
LSEI_1331
BS_ysoA related protein with TPR repeats.
  
     0.442
Your Current Organism:
Lactobacillus paracasei
NCBI taxonomy Id: 321967
Other names: L. paracasei ATCC 334, Lactobacillus casei ATCC 334, Lactobacillus casei str. ATCC 334, Lactobacillus casei strain ATCC 334, Lactobacillus paracasei ATCC 334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.