STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB74367.1Zinc ribbon domain protein; KEGG: edi:EDI_341030 1.4e-07 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96. (287 aa)    
Predicted Functional Partners:
KXB74368.1
Dinuclear metal center protein, YbgI family; Psort location: Cytoplasmic, score: 8.96; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.930
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.817
KXB74369.1
PepSY domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.783
KXB74370.1
Acyltransferase; KEGG: gfo:GFO_0085 1.1e-56 hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.783
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.707
KXB75896.1
Hypothetical protein.
  
     0.698
KXB73711.1
KEGG: pgn:PGN_1946 4.7e-131 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.683
KXB76116.1
Outer membrane protein, OMP85 family; KEGG: apb:SAR116_0511 1.1e-15 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
  
     0.682
KXB76607.1
Hypothetical protein; KEGG: maq:Maqu_0635 0.0066 DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega.
 
     0.665
KXB74647.1
KEGG: ftu:FTT_1319 8.9e-06 YjgP/YjgQ family permease K07091; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.659
Your Current Organism:
Porphyromonas somerae
NCBI taxonomy Id: 322095
Other names: CCUG 51464, DSM 23386, JCM 13867, P. somerae, Porphyromonas somerae Summanen et al. 2006 emend. Hahnke et al. 2016, WAL 6690
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