STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB73338.1Methyltransferase small domain protein; KEGG: pah:Poras_1089 6.1e-35 type 11 methyltransferase; K15460 tRNA1Val (adenine37-N6)-methyltransferase; Psort location: Cytoplasmic, score: 8.96; Belongs to the methyltransferase superfamily. (242 aa)    
Predicted Functional Partners:
KXB73340.1
Tetrapyrrole methylase; KEGG: pgn:PGN_1527 1.4e-76 hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
  
    0.853
KXB73339.1
NOL1/NOP2/sun family protein; KEGG: stj:SALIVA_1097 1.5e-54 sunL; putative rRNA methyltransferase; Psort location: CytoplasmicMembrane, score: 8.46.
       0.789
KXB73342.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.736
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.478
KXB73343.1
Putative DNA-binding protein; Psort location: Cytoplasmic, score: 8.96.
       0.459
KXB73390.1
KEGG: pdn:HMPREF9137_2300 0. ppdK; pyruvate, phosphate dikinase K01006; Psort location: Cytoplasmic, score: 9.97; Belongs to the PEP-utilizing enzyme family.
    
  0.416
Your Current Organism:
Porphyromonas somerae
NCBI taxonomy Id: 322095
Other names: CCUG 51464, DSM 23386, JCM 13867, P. somerae, Porphyromonas somerae Summanen et al. 2006 emend. Hahnke et al. 2016, WAL 6690
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.