STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PICST_69049HTH cro/C1-type domain-containing protein. (150 aa)    
Predicted Functional Partners:
PICST_82366
KH type-2 domain-containing protein.
   
 
 0.961
PICST_63979
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.916
PICST_77059
Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family.
   
   0.905
RPS20
Ribosomal protein S20.
   
 
 0.888
ASC1
WD repeat protein.
   
 
 0.876
PICST_31565
Ribosomal protein S10A.
   
 
 0.867
RPS2
40S ribosomal protein S2 (S4) (YS5) (RP12) (Omnipotent suppressor protein SUP44); Belongs to the universal ribosomal protein uS5 family.
   
   0.864
PICST_66616
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.856
PICST_85685
Uncharacterized protein.
   
 
 0.856
SPT15
TATA-binding protein.
    
 
 0.854
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.