STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD3Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (500 aa)    
Predicted Functional Partners:
PICST_57812
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
  
  
 
0.901
SDS3
Histone deacetylase and transcriptional regulator.
    
 0.874
SIN3
Transcription regulatory protein.
   
 0.860
HAT3
Subunit of histone acetyltransferase.
   
 0.802
PICST_83776
Uncharacterized protein.
   
 0.784
PICST_32737
Uncharacterized protein.
   
 0.778
SSN6
Glucose repression mediator protein.
    
 0.777
SNT1
DNA-binding protein SNT1.
    
 0.756
PICST_29380
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
   
 0.715
PICST_59773
PHD-type domain-containing protein.
   
 
 0.711
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.