STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PICST_34985Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (371 aa)    
Predicted Functional Partners:
ILV3
Dihydroxyacid dehydratase.
  
 0.991
LEU4
2-isopropylmalate synthase (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase).
  
 0.956
LEU6
Alpha-isopropylmalate synthase/homocitrate synthase (LEU4).
  
 0.956
ECM31
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate.
    
 0.948
HOM6
Homoserine dehydrogenase.
  
 
 0.921
TRP6
Anthranilate synthase component II.
  
 
 0.918
CYS3
Cystathionine gamma-lyase.
   
 0.915
PICST_36608
Cystathionine gamma-synthase.
   
 0.915
BAT2
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 
0.912
GSH1
Glutamate--cysteine ligase.
     
  0.900
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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