STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PICST_57545WD_REPEATS_REGION domain-containing protein. (385 aa)    
Predicted Functional Partners:
SKI3
Antiviral protein.
    
 0.999
CDC73
Accessory factor associated with RNA polymerase II.
    
 0.999
PICST_85287
Uncharacterized protein.
    
 0.999
CTR9
Protein required for normal CLN1 and CLN2 G1 cyclin expression.
    
 0.998
PICST_45484
DNA-directed RNA polymerase II regulator.
   
 0.996
PICST_57112
Plus3 domain-containing protein.
    
 0.897
PICST_31531
TP6A_N domain-containing protein.
    
 
 0.873
PICST_48738
Tr-type G domain-containing protein.
    
 0.866
LEO1
Member of the RNA polymerase II-associated Paf1 complex.
    
 0.857
CSL4
Exosome 3'->5 exonuclease subunit ski4 (Csl4).
   
 
 0.817
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.