STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLR1Pyridoxine 4-dehydrogenase. (348 aa)    
Predicted Functional Partners:
BUD16
Protein involved in bud site selection.
    
  0.914
BUD17
Protein involved in bud site selection.
    
  0.914
PICST_43552
Pyridox_oxase_2 domain-containing protein.
   
 
 0.901
PDX3
Pyridoxine (Pyridoxiamine) phosphate oxidase.
     
 0.901
PICST_47288
AB hydrolase-1 domain-containing protein.
  
  
 0.610
PICST_53441
Uncharacterized protein.
   
  
 0.460
PICST_29941
Uncharacterized protein.
     
 0.448
CYB2
Cytochrome b2, mitochondrial.
   
 
 0.425
CYB3
Cytochrome b2, mitochondrial; Belongs to the cytochrome b5 family.
   
 
 0.425
NUP133
Nuclear pore complex protein Nup133.
   
 0.421
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.