STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UGA1.24-aminobutyrate aminotransferase (GABA transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (470 aa)    
Predicted Functional Partners:
UGA2
Succinate-semialdehyde dehydrogenase.
  
 0.980
GAD2
Glutamate decarboxylase 2.
  
 0.964
DCE1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.957
ALD5
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.944
ALD2
Mitochondrial aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.943
ALD7
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.942
ALD6
Mitochondrial aldehyde dehydrogenase.
   
 
 0.934
HIB1
3-hydroxyisobutyrate dehydrogenase-like protein.
     
 0.921
UGA1.1
4-aminobutyrate aminotransferase (GABA transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
0.904
PAN4
Pantothenate synthase.
     
 0.903
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.