STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD62873.1Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-). (248 aa)    
Predicted Functional Partners:
SFD62901.1
Amino acid ABC transporter membrane protein, PAAT family.
 0.999
SFE34834.1
Putative lysine transport system permease protein.
 0.994
SFD78736.1
Polar amino acid transport system permease protein.
 0.989
SFD62925.1
Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.
 
 0.985
SFE34786.1
Putative lysine transport system substrate-binding protein.
 
 0.975
SFE26139.1
Polar amino acid transport system permease protein.
 0.973
SFD78773.1
Polar amino acid transport system substrate-binding protein.
 
 0.905
SFD74185.1
ATP-binding cassette, subfamily B.
 
     
0.899
SFD83818.1
ATP-binding cassette, subfamily B.
 
     
0.897
SFD70839.1
ABC-type multidrug transport system, ATPase and permease component.
 
     
0.895
Your Current Organism:
Sharpea azabuensis
NCBI taxonomy Id: 322505
Other names: DSM 18934, JCM 14210, Lactobacillus sp. DI49, Lactobacillus sp. HM244, Lactobacillus sp. HM250, Lactobacillus sp. ST#18, S. azabuensis, Sharpea azabuensis Morita et al. 2008, strain ST18
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