STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD71350.1Capsular exopolysaccharide family. (464 aa)    
Predicted Functional Partners:
SFD57040.1
Undecaprenyl-phosphate galactose phosphotransferase.
 
 
 0.996
SFD71416.1
Protein-tyrosine phosphatase.
 
 
 0.986
SFD71312.1
Capsular exopolysaccharide family.
 
 
0.983
SFD55172.1
Protein-tyrosine phosphatase.
 
 
 0.947
SFD71277.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.939
SFD55454.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.937
SFD71482.1
Polysaccharide biosynthesis protein.
  
 
 0.907
SFD55206.1
Capsular polysaccharide biosynthesis protein.
 
 
 0.903
SFD71513.1
CoA-binding domain-containing protein.
 
 
 0.883
SFD71241.1
EpsG family protein.
  
  
 0.867
Your Current Organism:
Sharpea azabuensis
NCBI taxonomy Id: 322505
Other names: DSM 18934, JCM 14210, Lactobacillus sp. DI49, Lactobacillus sp. HM244, Lactobacillus sp. HM250, Lactobacillus sp. ST#18, S. azabuensis, Sharpea azabuensis Morita et al. 2008, strain ST18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.