STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD75920.1Transposase, IS605 OrfB family, central region. (132 aa)    
Predicted Functional Partners:
SFD95216.1
Putative transposase.
  
     0.550
SFE03536.1
Putative transposase.
  
     0.509
SFD51665.1
Probable transposase.
  
     0.494
SFD55034.1
Hypothetical protein.
    
   0.489
SFD75860.1
cation:H+ antiporter.
       0.461
SFD75890.1
Predicted phospholipase, patatin/cPLA2 family.
       0.461
SFE11171.1
Transposase IS200 like.
 
    0.429
Your Current Organism:
Sharpea azabuensis
NCBI taxonomy Id: 322505
Other names: DSM 18934, JCM 14210, Lactobacillus sp. DI49, Lactobacillus sp. HM244, Lactobacillus sp. HM250, Lactobacillus sp. ST#18, S. azabuensis, Sharpea azabuensis Morita et al. 2008, strain ST18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.