Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFD49052.1 | SFE04283.1 | SAMN04487836_10241 | SAMN04487836_12034 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | tRNA (adenine22-N1)-methyltransferase. | 0.724 |
| SFD49052.1 | polC | SAMN04487836_10241 | SAMN04487836_10170 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.677 |
| SFD49052.1 | rnmV | SAMN04487836_10241 | SAMN04487836_11136 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.647 |
| SFD49052.1 | whiA | SAMN04487836_10241 | SAMN04487836_10547 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.783 |
| SFD85863.1 | rnmV | SAMN04487836_11128 | SAMN04487836_11136 | TatD DNase family protein. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.516 |
| SFD85863.1 | rsmA | SAMN04487836_11128 | SAMN04487836_11133 | TatD DNase family protein. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.909 |
| SFD86063.1 | rnmV | SAMN04487836_11137 | SAMN04487836_11136 | CoA-substrate-specific enzyme activase, putative. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.545 |
| SFE04283.1 | SFD49052.1 | SAMN04487836_12034 | SAMN04487836_10241 | tRNA (adenine22-N1)-methyltransferase. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.724 |
| SFE04283.1 | SFE04468.1 | SAMN04487836_12034 | SAMN04487836_12039 | tRNA (adenine22-N1)-methyltransferase. | ATP-dependent RNA helicase CshB. | 0.402 |
| SFE04283.1 | nadK | SAMN04487836_12034 | SAMN04487836_13123 | tRNA (adenine22-N1)-methyltransferase. | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.411 |
| SFE04283.1 | rnmV | SAMN04487836_12034 | SAMN04487836_11136 | tRNA (adenine22-N1)-methyltransferase. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.491 |
| SFE04283.1 | whiA | SAMN04487836_12034 | SAMN04487836_10547 | tRNA (adenine22-N1)-methyltransferase. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.712 |
| SFE04468.1 | SFE04283.1 | SAMN04487836_12039 | SAMN04487836_12034 | ATP-dependent RNA helicase CshB. | tRNA (adenine22-N1)-methyltransferase. | 0.402 |
| SFE04468.1 | nadK | SAMN04487836_12039 | SAMN04487836_13123 | ATP-dependent RNA helicase CshB. | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.470 |
| SFE04468.1 | rnmV | SAMN04487836_12039 | SAMN04487836_11136 | ATP-dependent RNA helicase CshB. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.462 |
| SFE04468.1 | rsmA | SAMN04487836_12039 | SAMN04487836_11133 | ATP-dependent RNA helicase CshB. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.508 |
| SFE42890.1 | rnmV | SAMN04487836_14812 | SAMN04487836_11136 | Ribonuclease HI. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.454 |
| nadK | SFE04283.1 | SAMN04487836_13123 | SAMN04487836_12034 | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | tRNA (adenine22-N1)-methyltransferase. | 0.411 |
| nadK | SFE04468.1 | SAMN04487836_13123 | SAMN04487836_12039 | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | ATP-dependent RNA helicase CshB. | 0.470 |
| nadK | rnmV | SAMN04487836_13123 | SAMN04487836_11136 | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.508 |
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