STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE13755.1Transcriptional regulator, XRE family with cupin sensor. (177 aa)    
Predicted Functional Partners:
SFE13642.1
Spermidine/putrescine transport system permease protein.
 
   
 0.882
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 0.869
SFE13676.1
Spermidine/putrescine transport system permease protein.
 
    0.867
SFE01765.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.675
SFE27522.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.675
SFE29181.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.576
SFE13794.1
DNA-binding transcriptional regulator, MarR family.
  
 
 0.572
SFD78014.1
Regulatory protein, gntR family.
  
  
 0.538
SFD96271.1
Succinyl-diaminopimelate desuccinylase.
  
 
 0.538
SFE02000.1
Succinyl-diaminopimelate desuccinylase.
  
 
 0.538
Your Current Organism:
Sharpea azabuensis
NCBI taxonomy Id: 322505
Other names: DSM 18934, JCM 14210, Lactobacillus sp. DI49, Lactobacillus sp. HM244, Lactobacillus sp. HM250, Lactobacillus sp. ST#18, S. azabuensis, Sharpea azabuensis Morita et al. 2008, strain ST18
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