STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE37610.1Galactosamine 6-phosphate isomerase AgaS. (390 aa)    
Predicted Functional Partners:
SFD85259.1
D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ.
 
  
 0.846
SFE37646.1
PTS system, N-acetylgalactosamine-specific IIA component.
 
  
 0.840
SFD85339.1
PTS system, N-acetylgalactosamine-specific IIC component.
 
  
 0.835
SFD85312.1
PTS system, N-acetylgalactosamine-specific IID component.
 
  
 0.797
SFE37457.1
N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.784
SFD85364.1
PTS system, N-acetylgalactosamine-specific IIB component.
 
  
 0.782
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.636
SFD96504.1
BadF-type ATPase.
 
  
  0.580
SFD85393.1
AraC-type DNA-binding protein.
  
     0.576
SFE23674.1
PTS system, mannose-specific IIB component.
  
  
 0.569
Your Current Organism:
Sharpea azabuensis
NCBI taxonomy Id: 322505
Other names: DSM 18934, JCM 14210, Lactobacillus sp. DI49, Lactobacillus sp. HM244, Lactobacillus sp. HM250, Lactobacillus sp. ST#18, S. azabuensis, Sharpea azabuensis Morita et al. 2008, strain ST18
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