T1K1D3_TETUR protein (Tetranychus urticae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1K1D3_TETUR

Uncharacterized protein. (1561 aa)

Predicted Functional Partners:

T1K5C4_TETUR

0.940

T1L217_TETUR

0.940

T1K8G4_TETUR

0.774

T1JPX9_TETUR

0.655

T1K691_TETUR

0.637

T1L4J7_TETUR

0.637

T1K7R7_TETUR

0.559

T1L4C8_TETUR

0.523

T1KNE0_TETUR

0.520

T1KLN6_TETUR

0.518

Your Current Organism:

Tetranychus urticae

NCBI taxonomy Id: 32264
Other names: T. urticae, red spider mite, two-spotted spider mite, twospotted mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1JPX9_TETUR	T1K1D3_TETUR	T1JPX9	T1K1D3	Uncharacterized protein.	Uncharacterized protein.	0.655
T1JPX9_TETUR	T1K5C4_TETUR	T1JPX9	T1K5C4	Uncharacterized protein.	VPS9 domain-containing protein.	0.954
T1JPX9_TETUR	T1K8G4_TETUR	T1JPX9	T1K8G4	Uncharacterized protein.	Uncharacterized protein.	0.873
T1JPX9_TETUR	T1KLN6_TETUR	T1JPX9	T1KLN6	Uncharacterized protein.	Uncharacterized protein.	0.585
T1JPX9_TETUR	T1KNE0_TETUR	T1JPX9	T1KNE0	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.417
T1JPX9_TETUR	T1L217_TETUR	T1JPX9	T1L217	Uncharacterized protein.	Uncharacterized protein.	0.954
T1JPX9_TETUR	T1L4C8_TETUR	T1JPX9	T1L4C8	Uncharacterized protein.	SH3 domain-containing protein.	0.548
T1K1D3_TETUR	T1JPX9_TETUR	T1K1D3	T1JPX9	Uncharacterized protein.	Uncharacterized protein.	0.655
T1K1D3_TETUR	T1K5C4_TETUR	T1K1D3	T1K5C4	Uncharacterized protein.	VPS9 domain-containing protein.	0.940
T1K1D3_TETUR	T1K691_TETUR	T1K1D3	T1K691	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.637
T1K1D3_TETUR	T1K7R7_TETUR	T1K1D3	T1K7R7	Uncharacterized protein.	Uncharacterized protein.	0.559
T1K1D3_TETUR	T1K8G4_TETUR	T1K1D3	T1K8G4	Uncharacterized protein.	Uncharacterized protein.	0.774
T1K1D3_TETUR	T1KLN6_TETUR	T1K1D3	T1KLN6	Uncharacterized protein.	Uncharacterized protein.	0.518
T1K1D3_TETUR	T1KNE0_TETUR	T1K1D3	T1KNE0	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.520
T1K1D3_TETUR	T1L217_TETUR	T1K1D3	T1L217	Uncharacterized protein.	Uncharacterized protein.	0.940
T1K1D3_TETUR	T1L4C8_TETUR	T1K1D3	T1L4C8	Uncharacterized protein.	SH3 domain-containing protein.	0.523
T1K1D3_TETUR	T1L4J7_TETUR	T1K1D3	T1L4J7	Uncharacterized protein.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.637
T1K5C4_TETUR	T1JPX9_TETUR	T1K5C4	T1JPX9	VPS9 domain-containing protein.	Uncharacterized protein.	0.954
T1K5C4_TETUR	T1K1D3_TETUR	T1K5C4	T1K1D3	VPS9 domain-containing protein.	Uncharacterized protein.	0.940
T1K5C4_TETUR	T1K8G4_TETUR	T1K5C4	T1K8G4	VPS9 domain-containing protein.	Uncharacterized protein.	0.999