Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACO76771.1 | ACO76772.1 | Avin_05180 | Avin_05190 | NAD-dependent aldehyde dehydrogenase. | Transcriptional regulatory protein, GntR family. | 0.532 |
ACO76771.1 | ACO76775.1 | Avin_05180 | Avin_05220 | NAD-dependent aldehyde dehydrogenase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.953 |
ACO76771.1 | ACO81025.1 | Avin_05180 | Avin_49290 | NAD-dependent aldehyde dehydrogenase. | Aldehyde dehydrogenase. | 0.900 |
ACO76772.1 | ACO76771.1 | Avin_05190 | Avin_05180 | Transcriptional regulatory protein, GntR family. | NAD-dependent aldehyde dehydrogenase. | 0.532 |
ACO76772.1 | ACO76775.1 | Avin_05190 | Avin_05220 | Transcriptional regulatory protein, GntR family. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.594 |
ACO76772.1 | ACO76778.1 | Avin_05190 | Avin_05250 | Transcriptional regulatory protein, GntR family. | D-galactarate dehydratase. | 0.631 |
ACO76775.1 | ACO76771.1 | Avin_05220 | Avin_05180 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | NAD-dependent aldehyde dehydrogenase. | 0.953 |
ACO76775.1 | ACO76772.1 | Avin_05220 | Avin_05190 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Transcriptional regulatory protein, GntR family. | 0.594 |
ACO76775.1 | ACO76778.1 | Avin_05220 | Avin_05250 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | D-galactarate dehydratase. | 0.942 |
ACO76775.1 | ACO79425.1 | Avin_05220 | Avin_32680 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Hypothetical protein. | 0.598 |
ACO76775.1 | ACO79451.1 | Avin_05220 | Avin_32950 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Transcriptional regulator, GntR family. | 0.624 |
ACO76775.1 | ACO81025.1 | Avin_05220 | Avin_49290 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Aldehyde dehydrogenase. | 0.952 |
ACO76775.1 | dapB | Avin_05220 | Avin_42950 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.688 |
ACO76775.1 | gatC | Avin_05220 | Avin_12640 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Glutamyl-tRNA(Gln) amidotransferase C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.652 |
ACO76775.1 | pheA | Avin_05220 | Avin_15830 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Chorismate mutase, gamma, beta and epsilon proteobacteria/ Prephenate dehydratase. | 0.723 |
ACO76775.1 | rpsO | Avin_05220 | Avin_42790 | Dihydrodipicolinate synthetase; Belongs to the DapA family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.587 |
ACO76778.1 | ACO76772.1 | Avin_05250 | Avin_05190 | D-galactarate dehydratase. | Transcriptional regulatory protein, GntR family. | 0.631 |
ACO76778.1 | ACO76775.1 | Avin_05250 | Avin_05220 | D-galactarate dehydratase. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.942 |
ACO76778.1 | ACO79451.1 | Avin_05250 | Avin_32950 | D-galactarate dehydratase. | Transcriptional regulator, GntR family. | 0.674 |
ACO79425.1 | ACO76775.1 | Avin_32680 | Avin_05220 | Hypothetical protein. | Dihydrodipicolinate synthetase; Belongs to the DapA family. | 0.598 |
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