Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACO77990.1 | ACO78526.1 | Avin_17770 | Avin_23380 | Lipopolysaccharide kinase. | Serine/threonine-kinase and phosphatase. | 0.693 |
ACO77990.1 | ACO81266.1 | Avin_17770 | Avin_51910 | Lipopolysaccharide kinase. | Ankyrin. | 0.882 |
ACO78524.1 | ACO78526.1 | Avin_23360 | Avin_23380 | Assimilatory nitrite reductase, small subunit. | Serine/threonine-kinase and phosphatase. | 0.707 |
ACO78524.1 | narK | Avin_23360 | Avin_23390 | Assimilatory nitrite reductase, small subunit. | Nitrate/nitrite transporter. | 0.980 |
ACO78524.1 | nasA | Avin_23360 | Avin_23370 | Assimilatory nitrite reductase, small subunit. | Assimilatory Nitrite reductase,large subunit; NasA; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.997 |
ACO78524.1 | nasB | Avin_23360 | Avin_23350 | Assimilatory nitrite reductase, small subunit. | Assimilatory nitrate reductase, NasB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.995 |
ACO78526.1 | ACO77990.1 | Avin_23380 | Avin_17770 | Serine/threonine-kinase and phosphatase. | Lipopolysaccharide kinase. | 0.693 |
ACO78526.1 | ACO78524.1 | Avin_23380 | Avin_23360 | Serine/threonine-kinase and phosphatase. | Assimilatory nitrite reductase, small subunit. | 0.707 |
ACO78526.1 | ACO79779.1 | Avin_23380 | Avin_36320 | Serine/threonine-kinase and phosphatase. | Protein kinase. | 0.777 |
ACO78526.1 | ACO81266.1 | Avin_23380 | Avin_51910 | Serine/threonine-kinase and phosphatase. | Ankyrin. | 0.713 |
ACO78526.1 | fmt | Avin_23380 | Avin_00160 | Serine/threonine-kinase and phosphatase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.791 |
ACO78526.1 | narK | Avin_23380 | Avin_23390 | Serine/threonine-kinase and phosphatase. | Nitrate/nitrite transporter. | 0.839 |
ACO78526.1 | nasA | Avin_23380 | Avin_23370 | Serine/threonine-kinase and phosphatase. | Assimilatory Nitrite reductase,large subunit; NasA; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.776 |
ACO78526.1 | nasB | Avin_23380 | Avin_23350 | Serine/threonine-kinase and phosphatase. | Assimilatory nitrate reductase, NasB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.673 |
ACO78526.1 | rsgA | Avin_23380 | Avin_07460 | Serine/threonine-kinase and phosphatase. | GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.724 |
ACO78526.1 | sun | Avin_23380 | Avin_00150 | Serine/threonine-kinase and phosphatase. | Fmu, rRNA SAM-dependent methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.716 |
ACO79779.1 | ACO78526.1 | Avin_36320 | Avin_23380 | Protein kinase. | Serine/threonine-kinase and phosphatase. | 0.777 |
ACO81266.1 | ACO77990.1 | Avin_51910 | Avin_17770 | Ankyrin. | Lipopolysaccharide kinase. | 0.882 |
ACO81266.1 | ACO78526.1 | Avin_51910 | Avin_23380 | Ankyrin. | Serine/threonine-kinase and phosphatase. | 0.713 |
ACO81266.1 | sun | Avin_51910 | Avin_00150 | Ankyrin. | Fmu, rRNA SAM-dependent methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.556 |
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