STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0419PRC-barrel. (169 aa)    
Predicted Functional Partners:
Nham_0420
Major facilitator superfamily MFS_1.
 
     0.793
Nham_2171
PRC-barrel.
  
     0.759
Nham_2361
PRC-barrel.
  
     0.759
Nham_2506
PRC-barrel.
  
     0.759
Nham_3794
PRC-barrel.
  
     0.757
Nham_3814
PRC-barrel.
  
     0.757
Nham_3931
PRC-barrel.
  
     0.757
Nham_3980
PRC-barrel.
  
     0.757
Nham_1152
PRC-barrel protein.
  
     0.756
Nham_3308
PRC-barrel.
  
     0.754
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.