STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0628Diguanylate cyclase/phosphodiesterase. (592 aa)    
Predicted Functional Partners:
Nham_1045
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
 
 0.902
Nham_1319
Hpt protein.
  
  
 0.817
Nham_1495
MotA/TolQ/ExbB proton channel.
 
    0.810
Nham_3549
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.806
Nham_1241
Diguanylate cyclase/phosphodiesterase.
 
 
0.803
Nham_3376
CheA signal transduction histidine kinase.
  
  
 0.796
Nham_4035
Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.
 
 
 0.780
Nham_0690
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
  
 0.779
Nham_1382
Flagellar protein FlgA.
   
  
 0.762
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
    0.752
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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